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Literature

Microarray study design
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project
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Comparability of the popular Microarray platforms
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
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Statistical data analysis
Should We Abandon the t-Test in the Analysis of Gene Expression Microarray Data: A Comparison of Variance Modeling Strategies
Publisher's page

Comparision of different microRNA measurement methods
Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs
Publisher's page

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